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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs146563102 chr12:112320187 AAAG/A 6.67E-6 191 12.57 14.9 4.03 KM Plot
LIHC rs147006413 chr12:112416209 G/GA 6.63E-6 191 12.57 14.85 5.17 KM Plot
LIHC rs147275760 chr22:30462733 G/A 2.59E-9 190 13.65 9.3 0.63 KM Plot
LIHC rs147341020 chr3:112320565 C/CAACGAA 0.000284 191 13.57 12 3.43 KM Plot
LIHC rs147435830 chr1:224571521 TTTTA/T 8.22E-5 192 2.63 13.83 13.58 KM Plot
LIHC rs1474417 chr11:73496138 C/T 1.06E-5 189 13.53 12.43 1.87 KM Plot
LIHC rs147509292 chr2:86346517 T/C 6.15E-6 191 13.87 0.2 7.43 KM Plot
LIHC rs147635554 chr3:125423610 G/T 0 188 13.78 12.03 0.75 KM Plot
LIHC rs147842914 chr11:73395805 AAG/A 1.43E-5 190 13.33 13.17 1.87 KM Plot
LIHC rs147903813 chr13:46640979 CAAAA/C 7.31E-5 189 12.87 20.15 12.07 KM Plot
LIHC rs148073299 chr6:44111301 TTTG/T 9.47E-5 192 13.58 9.43 3.67 KM Plot
LIHC rs148293827 chr2:86414338 CCT/C 0.000272 191 13.6 1.72 10.98 KM Plot
LIHC rs148373341 chr2:201891194 A/T 0 192 13.17 13.88 0.37 KM Plot
LIHC rs148698477 chr12:112325472 C/CTG 5.12E-5 191 12.1 14.62 6.7 KM Plot
LIHC rs148723682 chr7:64449524 T/TACAC 2.03E-7 189 2.9 4.73 13.97 KM Plot